How do payments appear in Xero after a customer pays an invoice?

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Invoices paid from a payment link sent by Paycepaid, will be reconciled on Xero and allocated against the customer’s file.
An invoice paid using different means (EFT, Bpay, Paypal etc) once reconciled through Xero using regular channels will also be reconciled on Paycepaid, ensuring no payment reminders are sent out incorrectly.